Combrex Enter Keyword, gene symbol, or identifier (more options; Help )
Enter species name
Gene functional status (select)
Phenotype association (select)[View list of phenotypes]
Check to restrict search to:
Genes in Category A-C and Emerging/Re-Emerging pathogens
Genes in curated Protein Clusters
Genes with predictions submitted to COMBREX
P
Genes with solved structures in PDB
S
Genes with Pfam domains shared with human proteins
H
Genes with products purified by PSI
U
Genes cloned by PSI
C
close options

 

Gene vsr from Prochlorococcus marinus str. AS9601: hypothetical protein
Member of NCBI Protein Clusters CLSK943043(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 4717123
UniProtKB accession
RefSeq Protein accession YP_001008822.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: vsr
  • locus tag: A9601_04271
Organism Prochlorococcus marinus str. AS9601 (NCBI TaxID: 146891)
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction DNA mismatch endonuclease Vsr
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green NGO1173 from Neisseria gonorrhoeae FA 1090
(%_identity=46.83; E_val=2e-29; BitScore=122.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
blue vsr from Escherichia coli 55989

to see the rest 32 genes click here
GO terms
  • BP: GO:0006298 : mismatch repair : IEA
  • MF: GO:0003677 : DNA binding : IEA
  • MF: GO:0004519 : endonuclease activity : IEA
Domain Structure from CDD
  • Vsr: Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosph.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database