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Gene HP0509 from Helicobacter pylori 26695: glycolate oxidase subunit (glcD)
Member of NCBI Protein Clusters CLSK872372(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898838
UniProtKB accession
RefSeq Protein accession NP_207306.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP0509
  • locus tag: HP0509
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc:
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction glycolate oxidase, subunit GlcD
Prof. Vitkup 1.1.2.4 / Confidence:0.061 (References: 19935659, 16507154)
Berkeley Phylogenomics Group GO:0003885 D-arabinono-1,4-lactone oxidase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0005524 ATP binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0050614 delta24-sterol reductase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0042802 identical protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0004458 D-lactate dehydrogenase (cytochrome) activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0042605 peptide antigen binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0051990 (R)-2-hydroxyglutarate dehydrogenase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0050660 FAD binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0019899 enzyme binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0043178 alcohol binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003779 actin binding / (References: 19435885)
Berkeley Phylogenomics Group 1.3.2.3: L-galactonolactone dehydrogenase. / (References: 19435885)
Berkeley Phylogenomics Group GO:0019154 glycolate dehydrogenase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group 2.5.1.26: Alkylglycerone-phosphate synthase. / (References: 19435885)
Berkeley Phylogenomics Group GO:0008609 alkylglycerone-phosphate synthase activity / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
GO terms
  • MF: GO:0003824 : catalytic activity : IEA
  • MF: GO:0008891 : glycolate oxidase activity : IEA
  • MF: GO:0016491 : oxidoreductase activity : IEA
  • CC: GO:0009339 : glycolate oxidase complex : IEA
  • MF: GO:0050660 : FAD binding : IEA
Domain Structure from CDD
  • FAD_binding_4: FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar.... (More)
  • glcD: glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of sev.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
domain fusion
HP0507hypothetical protein
 
 
HP0508hypothetical protein
 
 
HP0510dihydrodipicolinate reductase
 
 
HP0498sodium- and chloride-dependent transporter 
 
HP0666glycerol-3-phosphate dehydrogenase 
 
HP0497sodium- and chloride-dependent transporter 
 
HP1222D-lactate dehydrogenase (dld) 
 
Metabolic Annotation from Palsson Lab

Metabolic Reaction: GLYCTO1

Name
Glycolate oxidase
Formula
glyclt[c] + o2[c] -> glx[c] + h2o2[c]
Pathway
Others

Source: Ported to COMBREX by Segre's Lab
KEGG