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Gene rplD from Helicobacter pylori 26695: 50S ribosomal protein L4
Member of NCBI Protein Clusters PRK05319(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898886
UniProtKB accession
RefSeq Protein accession NP_208110.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rplD
  • locus tag: HP1318
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L4
Berkeley Phylogenomics Group GO:0008266 poly(U) RNA binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rplD from Escherichia coli str. K-12 substr. MG1655
(%_identity=40.11; E_val=4e-26; BitScore=112.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rplD from Bacillus halodurans C-125

to see the rest 8 genes click here
GO terms
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • CC: GO:0005840 : ribosome : IEA
Domain Structure from CDD
  • Ribosomal_L4: Ribosomal protein L4/L1 family. 60S ribosomal protein L4; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
rplB50S ribosomal protein L2
 
 
rplW50S ribosomal protein L23
 
 
rplC50S ribosomal protein L3
 
 
rpsJ30S ribosomal protein S10
 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)