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Gene HP1340 from Helicobacter pylori 26695: biopolymer transport protein (exbD)
Member of NCBI Protein Clusters CLSK872539(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898892
UniProtKB accession
RefSeq Protein accession NP_208132.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP1340
  • locus tag: HP1340
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Source Predicted function(s)
NCBI Protein Cluster Prediction biopolymer transport protein exbD
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green exbD from Pseudomonas putida

to see the rest 5 genes click here
GO terms
  • CC: GO:0016020 : membrane : IEA
  • MF: GO:0005215 : transporter activity : IEA
  • BP: GO:0015031 : protein transport : IEA
  • BP: GO:0006810 : transport : IEA
  • CC: GO:0005886 : plasma membrane : IEA
  • CC: GO:0016021 : integral to membrane : IEA
Domain Structure from CDD
  • ExbD: Biopolymer transport protein ExbD/TolR. biopolymer transport protein ExbD; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
HP1339biopolymer transport protein (exbB)
 
 
 
HP1341siderophore-mediated iron transport protein (tonB) 
 
 
HP1375UDP-N-acetylglucosamine acyltransferase  
 
HP1445biopolymer transport protein (exbB)  
 
HP1489lipase-like protein  
 
HP0582hypothetical protein  
 
HP0605hypothetical protein  
 
HP09573-deoxy-D-manno-octulosonic-acid transferase  
 
HP0915iron-regulated outer membrane protein (frpB)  
 
HP00032-dehydro-3-deoxyphosphooctonate aldolase  
 
lpxDUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra  
 
HP1130biopolymer transport protein (exbB)  
 
lpxCUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d  
 
HP1511hypothetical protein  
 
HP0876iron-regulated outer membrane protein (frpB)  
 
HP0916iron-regulated outer membrane protein (frpB)  
 
lpxKtetraacyldisaccharide 4'-kinase  
 
HP02303-deoxy-manno-octulosonate cytidylyltransferase  
 
HP0655protective surface antigen D15  
 
HP1512iron-regulated outer membrane protein (frpB)  
 
lpxBipid-A-disaccharide synthase  
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)