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Gene rplM from Helicobacter pylori 26695: 50S ribosomal protein L13
Member of NCBI Protein Clusters PRK09216(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898946
UniProtKB accession
RefSeq Protein accession NP_206884.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rplM
  • locus tag: HP0084
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L13
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003723 RNA binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rplM from Escherichia coli str. K-12 substr. MG1655
(%_identity=50.0; E_val=9e-37; BitScore=147.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rplM from Escherichia coli str. K-12 substr. MG1655

to see the rest 4 genes click here
GO terms
  • CC: GO:0005622 : intracellular : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
  • CC: GO:0005840 : ribosome : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
Domain Structure from CDD
  • Ribosomal_L13: Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early fo.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
HP0082methyl-accepting chemotaxis transducer (tlpC)
 
 
rpsI30S ribosomal protein S9
 
 
HP0086hypothetical protein
 
 
HP0085hypothetical protein
 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)