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Gene rplU from Helicobacter pylori 26695: 50S ribosomal protein L21
Member of NCBI Protein Clusters PRK05573(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898948
UniProtKB accession
RefSeq Protein accession NP_207094.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rplU
  • locus tag: HP0296
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L21
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rplU from Escherichia coli str. K-12 substr. MG1655
(%_identity=46.08; E_val=4e-19; BitScore=87.8)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green DR_0086 from Deinococcus radiodurans R1

to see the rest 4 genes click here
GO terms
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • CC: GO:0005840 : ribosome : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
Domain Structure from CDD
  • Ribosomal_L21p: Ribosomal prokaryotic L21 protein. 50S ribosomal protein L21; Validated

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
rpmA50S ribosomal protein L27
 
 
 
HP0298dipeptide ABC transporter, periplasmic dipeptide-b
 
  
mraWS-adenosyl-methyltransferase MraW  
 
HP0088RNA polymerase sigma factor RpoD  
 
rbfAribosome-binding factor A  
 
nusBtranscription antitermination protein NusB  
 
secApreprotein translocase subunit SecA  
 
ruvAHolliday junction DNA helicase RuvA  
 
smpBSsrA-binding protein  
 
dnaAchromosomal replication initiation protein  
 
lspAlipoprotein signal peptidase  
 
trmDtRNA (guanine-N(1)-)-methyltransferase  
 
secEpreprotein translocase membrane subunit  
 
rpsT30S ribosomal protein S20  
 
HP0717DNA polymerase III subunits gamma and tau  
 
rplT50S ribosomal protein L20  
 
HP0955prolipoprotein diacylglyceryl transferase  
 
HP1362replicative DNA helicase  
 
dnaEDNA polymerase III subunit alpha  
 
rpmI50S ribosomal protein L35  
 
HP1247DNA polymerase III subunit delta  
 
ruvBHolliday junction DNA helicase RuvB  
 
ligANAD-dependent DNA ligase LigA  
 
HP1448ribonuclease P, protein component (rnpA)  
 
rplI50S ribosomal protein L9  
 
tsfelongation factor Ts  
 
infCtranslation initiation factor IF-3  
 
rpmE50S ribosomal protein L31  
 
tigtrigger factor  
 
defpeptide deformylase  
 
HP1051hypothetical protein