Combrex Enter Keyword, gene symbol, or identifier (more options; Help )
Enter species name
Gene functional status (select)
Phenotype association (select)[View list of phenotypes]
Check to restrict search to:
Genes in Category A-C and Emerging/Re-Emerging pathogens
Genes in curated Protein Clusters
Genes with predictions submitted to COMBREX
P
Genes with solved structures in PDB
S
Genes with Pfam domains shared with human proteins
H
Genes with products purified by PSI
U
Genes cloned by PSI
C
close options

 

Gene HP0679 from Helicobacter pylori 26695: lipopolysaccharide biosynthesis protein (wbpB)
Member of NCBI Protein Clusters CLSK867787(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898956
UniProtKB accession
RefSeq Protein accession NP_207473.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP0679
  • locus tag: HP0679
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction oxidoreductase domain-containing protein
Prof. Vitkup 1.1.1.18 / Confidence:0.002 (References: 19935659, 16507154)
Berkeley Phylogenomics Group 1.3.1.20: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase. / (References: 19435885)
Berkeley Phylogenomics Group 1.1.1.18: Inositol 2-dehydrogenase. / (References: 19435885)
Berkeley Phylogenomics Group 1.1.1.292: 1,5-anhydro-D-fructose reductase (1,5-anhydro-D-mannitol-forming). / (References: 19435885)
Berkeley Phylogenomics Group GO:0047837 D-xylose 1-dehydrogenase (NADP+) activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green ydgJ from Escherichia coli str. K-12 substr. MG1655

to see the rest 8 genes click here
GO terms
  • BP: GO:0055114 : oxidation reduction : IEA
  • MF: GO:0003824 : catalytic activity : IEA
  • MF: GO:0016491 : oxidoreductase activity : IEA
  • BP: GO:0008152 : metabolic process : IEA
  • MF: GO:0005488 : binding : IEA
Domain Structure from CDD
  • GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain. This is the C terminal of a family of putative oxidoreductases.

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
HP0677hypothetical protein
 
HP0681hypothetical protein
 
HP0680ribonucleotide-diphosphate reductase subunit alpha