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Gene rpsT from Helicobacter pylori 26695: 30S ribosomal protein S20
Member of NCBI Protein Clusters PRK00239(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898977
UniProtKB accession
RefSeq Protein accession NP_206876.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsT
  • locus tag: HP0076
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S20
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green rpsT from Escherichia coli str. K-12 substr. MG1655

to see the rest 3 genes click here
GO terms
  • CC: GO:0005622 : intracellular : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • CC: GO:0005840 : ribosome : IEA
Domain Structure from CDD
  • Ribosomal_S20p: Ribosomal protein S20. 30S ribosomal protein S20; Reviewed

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
phylogenetic profile
HP0078hypothetical protein
 
 
prfApeptide chain release factor 1
 
 
defpeptide deformylase 
 
smpBSsrA-binding protein 
 
dnaAchromosomal replication initiation protein 
 
lspAlipoprotein signal peptidase 
 
trmDtRNA (guanine-N(1)-)-methyltransferase 
 
secEpreprotein translocase membrane subunit 
 
HP0088RNA polymerase sigma factor RpoD 
 
rplT50S ribosomal protein L20 
 
HP1362replicative DNA helicase 
 
dnaEDNA polymerase III subunit alpha 
 
rpmI50S ribosomal protein L35 
 
HP1247DNA polymerase III subunit delta 
 
nusBtranscription antitermination protein NusB 
 
ligANAD-dependent DNA ligase LigA 
 
HP1448ribonuclease P, protein component (rnpA) 
 
rplI50S ribosomal protein L9 
 
rplU50S ribosomal protein L21 
 
secApreprotein translocase subunit SecA 
 
HP1051hypothetical protein 
 
ruvAHolliday junction DNA helicase RuvA 
 
tigtrigger factor 
 
mraWS-adenosyl-methyltransferase MraW 
 
HP0717DNA polymerase III subunits gamma and tau 
 
HP0955prolipoprotein diacylglyceryl transferase 
 
rbfAribosome-binding factor A 
 
infCtranslation initiation factor IF-3 
 
ruvBHolliday junction DNA helicase RuvB 
 
tsfelongation factor Ts 
 
rpmE50S ribosomal protein L31 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)