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Member of NCBI Protein Clusters | PRK00102(See COMBREX Page ) (See NCBI page) |
NCBI Entrez GeneID | 899029 |
UniProtKB accession | |
RefSeq Protein accession | NP_207456.1 (PROVISIONAL) |
Gene Symbol(s) |
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Organism | Helicobacter pylori 26695 (NCBI TaxID: 85962) |
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand. | |
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info). | |
Post a comment about this gene to appear on this page (info). |
Source | Predicted function(s) |
NCBI Protein Cluster Prediction | ribonuclease III |
Berkeley Phylogenomics Group | GO:0003723 RNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0050733 RS domain binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0048027 mRNA 5'-UTR binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0035197 siRNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0042803 protein homodimerization activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0008157 protein phosphatase 1 binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003730 mRNA 3'-UTR binding / (References: 19435885) |
Berkeley Phylogenomics Group | 3.1.26.3: Ribonuclease III. / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003725 double-stranded RNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0035198 miRNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0042802 identical protein binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003682 chromatin binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0004647 phosphoserine phosphatase activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003726 double-stranded RNA adenosine deaminase activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0004131 cytosine deaminase activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0010843 promoter binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003735 structural constituent of ribosome / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0004525 ribonuclease III activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0016563 transcription activator activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0017151 DEAD/H-box RNA helicase binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0005515 protein binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003727 single-stranded RNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003729 mRNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0016564 transcription repressor activity / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0003677 DNA binding / (References: 19435885) |
Berkeley Phylogenomics Group | GO:0016443 bidentate ribonuclease III activity / (References: 19435885) |
Functional Status |
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Source of prediction | NCBI Protein Clusters info | |
EC number |
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BLASTP hits to experimentally validated proteins |
other hits with E-value < 1e-05 |
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Share the same Pfam domain composition with the following experimentally validated proteins |
to see the rest 2 gene click here |
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GO terms |
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Domain Structure from CDD |
See domain structure on NCBI Conserved Domain Database |
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Domain structure from Pfam |
See domain structure on Pfam Database |
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com |
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Phenotype | Description | Expression Class |
Reference(s) |
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Candidate essential gene | Identified as essential gene in one or more studies (see references) | Knock out |
PMID: 15547264
(candidate essential) |