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Gene rpmA from Helicobacter pylori 26695: 50S ribosomal protein L27
Member of NCBI Protein Clusters PRK05435(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899199
UniProtKB accession
RefSeq Protein accession NP_207095.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpmA
  • locus tag: HP0297
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc:
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L27
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rpmA from Escherichia coli str. K-12 substr. MG1655
(%_identity=63.53; E_val=6e-24; BitScore=103.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rpmA from Deinococcus radiodurans R1

to see the rest 4 genes click here
GO terms
  • CC: GO:0005622 : intracellular : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • CC: GO:0005840 : ribosome : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
Domain Structure from CDD
  • Ribosomal_L27: Ribosomal L27 protein. 50S ribosomal protein L27; Validated

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
rplU50S ribosomal protein L21
 
 
 
HP0299dipeptide ABC transporter, permease protein (dppB)
 
  
HP0298dipeptide ABC transporter, periplasmic dipeptide-b
 
  
aspSaspartyl-tRNA synthetase  
 
rplQ50S ribosomal protein L17  
 
HP0745hypothetical protein  
 
fmtmethionyl-tRNA formyltransferase  
 
HP0962acyl carrier protein (acpP)  
 
rncribonuclease III  
 
rplS50S ribosomal protein L19  
 
HP1069cell division protein (ftsH)  
 
rpsR30S ribosomal protein S18  
 
rplL50S ribosomal protein L7/L12  
 
HP0347hypothetical protein  
 
obgEGTPase ObgE  
 
HP0559acyl carrier protein (acpP)  
 
tsfelongation factor Ts  
 
mnmAtRNA-specific 2-thiouridylase MnmA  
 
HP0956hypothetical protein  
 
frrribosome recycling factor  
 
HP0013hypothetical protein  
 
rpsP30S ribosomal protein S16  
 
tufelongation factor Tu  
 
HP1245single-stranded DNA-binding protein  
 
rpsF30S ribosomal protein S6  
 
rpmG50S ribosomal protein L33  
 
prfApeptide chain release factor 1  
 
HP1497peptidyl-tRNA hydrolase  
 
HP0355GTP-binding protein LepA  
 
HP1450putative inner membrane protein translocase compon  
 
rplI50S ribosomal protein L9  
 
HP0286cell division protein (ftsH)  
 
rpmI50S ribosomal protein L35  
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)