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Gene HP0956 from Helicobacter pylori 26695: hypothetical protein
Member of NCBI Protein Clusters CLSK872473(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899489
UniProtKB accession
RefSeq Protein accession NP_207748.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP0956
  • locus tag: HP0956
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc:
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction pseudouridine synthase
Berkeley Phylogenomics Group GO:0009982 pseudouridine synthase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green truC from Escherichia coli str. K-12 substr. MG1655

to see the rest 3 genes click here
GO terms
  • MF: GO:0009982 : pseudouridine synthase activity : IEA
  • BP: GO:0001522 : pseudouridine synthesis : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • BP: GO:0009451 : RNA modification : IEA
  • MF: GO:0016853 : isomerase activity : IEA
Domain Structure from CDD
  • RluA: Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
  • PseudoU_synth_RluCD_like: PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and .... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
phylogenetic profile
HP0954oxygen-insensitive NAD(P)H nitroreductase
 
 
HP0955prolipoprotein diacylglyceryl transferase
 
 
HP09573-deoxy-D-manno-octulosonic-acid transferase
 
 
HP0958hypothetical protein
 
 
HP1497peptidyl-tRNA hydrolase 
 
aspSaspartyl-tRNA synthetase 
 
rplQ50S ribosomal protein L17 
 
frrribosome recycling factor 
 
HP0355GTP-binding protein LepA 
 
HP1245single-stranded DNA-binding protein 
 
rncribonuclease III 
 
rplS50S ribosomal protein L19 
 
HP1069cell division protein (ftsH) 
 
rplL50S ribosomal protein L7/L12 
 
rpmA50S ribosomal protein L27 
 
HP1450putative inner membrane protein translocase compon 
 
HP13481-acyl-glycerol-3-phosphate acyltransferase (plsC) 
 
rpsP30S ribosomal protein S16 
 
HP0286cell division protein (ftsH) 
 
fmtmethionyl-tRNA formyltransferase 
 
prfApeptide chain release factor 1 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)