Combrex Enter Keyword, gene symbol, or identifier (more options; Help )
Enter species name
Gene functional status (select)
Phenotype association (select)[View list of phenotypes]
Check to restrict search to:
Genes in Category A-C and Emerging/Re-Emerging pathogens
Genes in curated Protein Clusters
Genes with predictions submitted to COMBREX
P
Genes with solved structures in PDB
S
Genes with Pfam domains shared with human proteins
H
Genes with products purified by PSI
U
Genes cloned by PSI
C
close options

 

Gene HP1139 from Helicobacter pylori 26695: SpoOJ regulator (soj)
Member of NCBI Protein Clusters CLSK872508(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899676
UniProtKB accession
RefSeq Protein accession NP_207930.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP1139
  • locus tag: HP1139
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction ParA family chromosome partitioning ATPase
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green parA from Bacillus subtilis subsp. subtilis str. 168
(%_identity=46.15; E_val=1e-61; BitScore=231.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green parA from Agrobacterium tumefaciens

to see the rest 9 genes click here
Domain Structure from CDD
  • ParA: ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segr.... (More)
  • Soj: ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
HP1137F0F1 ATP synthase subunit B'
 
 
HP1138plasmid replication-partition related protein
 
 
HP1140biotin--protein ligase
 
 
fmtmethionyl-tRNA formyltransferase
 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)