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Gene fmt from Helicobacter pylori 26695: methionyl-tRNA formyltransferase
Member of NCBI Protein Clusters PRK00005(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899678
UniProtKB accession
RefSeq Protein accession NP_207932.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: fmt
  • locus tag: HP1141
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Source Predicted function(s)
NCBI Protein Cluster Prediction methionyl-tRNA formyltransferase
Prof. Vitkup 2.1.2.9 / Confidence:0.726 (References: 19935659, 16507154)
Berkeley Phylogenomics Group 2.1.2.9: Methionyl-tRNA formyltransferase. / (References: 19435885)
Berkeley Phylogenomics Group GO:0032403 protein complex binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group 1.5.1.6: Formyltetrahydrofolate dehydrogenase. / (References: 19435885)
Berkeley Phylogenomics Group GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor / (References: 19435885)
Berkeley Phylogenomics Group GO:0016742 hydroxymethyl-, formyl- and related transferase activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0004479 methionyl-tRNA formyltransferase activity / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
EC number
BLASTP hits to experimentally validated proteins
green fmt from Escherichia coli str. K-12 substr. MG1655
(%_identity=36.27; E_val=2e-44; BitScore=174.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green fmt from Escherichia coli str. K-12 substr. MG1655

to see the rest 2 gene click here
GO terms
  • MF: GO:0003824 : catalytic activity : IEA
  • MF: GO:0004479 : methionyl-tRNA formyltransferase activity : IEA
  • BP: GO:0009058 : biosynthetic process : IEA
  • MF: GO:0008168 : methyltransferase activity : IEA
  • MF: GO:0016742 : hydroxymethyl-, formyl- and related transferase activity : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0016740 : transferase activity : IEA
Domain Structure from CDD
  • Formyl_trans_C: Formyl transferase, C-terminal domain.
  • Formyl_trans_N: Formyl transferase. phosphoribosylglycinamide formyltransferase; Reviewed
  • fmt: methionyl-tRNA formyltransferase; Reviewed

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
phylogenetic profile
HP1139SpoOJ regulator (soj)
 
 
HP1140biotin--protein ligase
 
 
HP1142hypothetical protein
 
 
HP1143hypothetical protein
 
 
HP1245single-stranded DNA-binding protein 
 
HP0962acyl carrier protein (acpP) 
 
rncribonuclease III 
 
rplS50S ribosomal protein L19 
 
HP1069cell division protein (ftsH) 
 
rpsF30S ribosomal protein S6 
 
rpsR30S ribosomal protein S18 
 
rplL50S ribosomal protein L7/L12 
 
HP0347hypothetical protein 
 
rpmA50S ribosomal protein L27 
 
HP1450putative inner membrane protein translocase compon 
 
rpmG50S ribosomal protein L33 
 
prfApeptide chain release factor 1 
 
HP1497peptidyl-tRNA hydrolase 
 
HP0355GTP-binding protein LepA 
 
rpmI50S ribosomal protein L35 
 
rplI50S ribosomal protein L9 
 
tufelongation factor Tu 
 
HP0013hypothetical protein 
 
mnmAtRNA-specific 2-thiouridylase MnmA 
 
rpsP30S ribosomal protein S16 
 
HP0286cell division protein (ftsH) 
 
obgEGTPase ObgE 
 
HP0559acyl carrier protein (acpP) 
 
tsfelongation factor Ts 
 
HP0956hypothetical protein 
 
frrribosome recycling factor 
 
aspSaspartyl-tRNA synthetase 
 
rplQ50S ribosomal protein L17 
 
HP0745hypothetical protein