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Gene HP1149 from Helicobacter pylori 26695: hypothetical protein
Member of NCBI Protein Clusters PRK14593(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899687
UniProtKB accession
RefSeq Protein accession NP_207940.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: HP1149
  • locus tag: HP1149
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc:
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 16S rRNA-processing protein RimM
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green rimM from Thermus thermophilus HB8

to see the rest 2 gene click here
GO terms
  • BP: GO:0006364 : rRNA processing : IEA
  • CC: GO:0005737 : cytoplasm : IEA
  • BP: GO:0042274 : ribosomal small subunit biogenesis : IEA
  • CC: GO:0005840 : ribosome : IEA
  • BP: GO:0042254 : ribosome biogenesis : IEA
  • MF: GO:0043022 : ribosome binding : IEA
Domain Structure from CDD
  • PRCH: N/A. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but a.... (More)
  • rimM: 16S rRNA-processing protein RimM; Provisional
  • RimM: RimM N-terminal domain. The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown t.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
rplS50S ribosomal protein L19
 
  
trmDtRNA (guanine-N(1)-)-methyltransferase
 
 
 
HP1150hypothetical protein
 
 
 
rpsP30S ribosomal protein S16
 
  
HP0750hypothetical protein  
 
HP0606membrane fusion protein (mtrC)  
 
HP0506hypothetical protein  
 
clpPATP-dependent Clp protease proteolytic subunit  
 
HP1054hypothetical protein  
 
HP0970nickel-cobalt-cadmium resistance protein (nccB)  
 
HP1393DNA repair protein (recN)  
 
murCUDP-N-acetylmuramate--L-alanine ligase  
 
HP1523ATP-dependent DNA helicase RecG  
 
HP1488hypothetical protein  
 
HP1482exodeoxyribonuclease VII small subunit  
 
HP0387primosome assembly protein PriA  
 
HP1541transcription-repair coupling factor (trcF)  
 
HP0549glutamate racemase  
 
HP1556cell division protein (ftsI)  
 
clpXATP-dependent protease ATP-binding subunit ClpX  
 
HP0743rod shape-determining protein (mreB)  
 
HP1328cation efflux system protein (czcA)  
 
HP1560cell division protein (ftsW)  
 
HP0597penicillin-binding protein 1A (PBP-1A)  
 
HP0648UDP-N-acetylglucosamine 1-carboxyvinyltransferase  
 
HP0683UDP-N-acetylglucosamine pyrophosphorylase (glmU)  
 
queAS-adenosylmethionine:tRNA ribosyltransferase-isome  
 
murBUDP-N-acetylenolpyruvoylglucosamine reductase  
 
HP1543toxR-activated gene (tagE)  
 
HP0480GTP-binding protein, fusA-homolog (yihK)  
 
HP0941alanine racemase, biosynthetic (alr)  
 
coaDphosphopantetheine adenylyltransferase  
 
HP1544toxR-activated gene (tagE)  
 
HP1565penicillin-binding protein 2 (pbp2)  
 
HP1459hypothetical protein  
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)