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Gene rpsD from Helicobacter pylori 26695: 30S ribosomal protein S4
Member of NCBI Protein Clusters PRK05327(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899908
UniProtKB accession
RefSeq Protein accession NP_208086.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsD
  • locus tag: HP1294
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S4
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0019843 rRNA binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0030515 snoRNA binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)
Berkeley Phylogenomics Group GO:0030371 translation repressor activity / (References: 19435885)
Berkeley Phylogenomics Group GO:0045182 translation regulator activity / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rpsD from Thermus thermophilus HB8
(%_identity=48.8; E_val=1e-55; BitScore=210.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rpsD from Thermus thermophilus HB8

to see the rest 4 genes click here
GO terms
  • CC: GO:0015935 : small ribosomal subunit : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • CC: GO:0005840 : ribosome : IEA
Domain Structure from CDD
  • Ribosomal_S4: Ribosomal protein S4/S9 N-terminal domain. This family includes small ribosomal subunit S9 from prokaryotes and S16 from.... (More)
  • rpsD: 30S ribosomal protein S4; Validated
  • S4: S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
HP129530S ribosomal protein S11
 
 
rplQ50S ribosomal protein L17
 
 
HP1293DNA-directed RNA polymerase subunit alpha
 
 
rpsM30S ribosomal protein S13