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Gene rpsP from Helicobacter pylori 26695: 30S ribosomal protein S16

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Summary
Member of NCBI Protein Clusters PRK00040(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899911
UniProtKB accession
RefSeq Protein accession NP_207942.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsP
  • locus tag: HP1151
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)

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Actions You Can Take
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).

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Function Predictions
Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S16
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)

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Supporting Functional Information
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rpsP from Escherichia coli str. K-12 substr. MG1655
(%_identity=47.3; E_val=4e-16; BitScore=77.8)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rpsP from Thermus thermophilus

to see the rest 4 genes click here
GO terms
  • CC: GO:0005622 : intracellular : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • CC: GO:0005840 : ribosome : IEA
Domain Structure from CDD
  • Ribosomal_S16: Ribosomal protein S16. 30S ribosomal protein S16; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database

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Functionally Linked Genes
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
HP1149hypothetical protein
 
  
HP1150hypothetical protein
 
 
 
HP1152signal recognition particle protein (ffh)
 
 
 
valSvalyl-tRNA synthetase
 
  
mnmAtRNA-specific 2-thiouridylase MnmA  
 
HP1245single-stranded DNA-binding protein  
 
rpsF30S ribosomal protein S6  
 
aspSaspartyl-tRNA synthetase  
 
rplQ50S ribosomal protein L17  
 
HP0745hypothetical protein  
 
prfApeptide chain release factor 1  
 
HP1497peptidyl-tRNA hydrolase  
 
HP0355GTP-binding protein LepA  
 
HP0286cell division protein (ftsH)  
 
HP0962acyl carrier protein (acpP)  
 
rncribonuclease III  
 
rplS50S ribosomal protein L19  
 
HP1069cell division protein (ftsH)  
 
rpsR30S ribosomal protein S18  
 
rplL50S ribosomal protein L7/L12  
 
HP0347hypothetical protein  
 
rpmA50S ribosomal protein L27  
 
HP1450putative inner membrane protein translocase compon  
 
rpmG50S ribosomal protein L33  
 
fmtmethionyl-tRNA formyltransferase  
 
obgEGTPase ObgE  
 
rpmI50S ribosomal protein L35  
 
rplI50S ribosomal protein L9  
 
HP0559acyl carrier protein (acpP)  
 
tsfelongation factor Ts  
 
HP0956hypothetical protein  
 
frrribosome recycling factor  
 
tufelongation factor Tu  
 
HP0013hypothetical protein  
 

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Pathway Information