Combrex Enter Keyword, gene symbol, or identifier (more options; Help )
Enter species name
Gene functional status (select)
Phenotype association (select)[View list of phenotypes]
Check to restrict search to:
Genes in Category A-C and Emerging/Re-Emerging pathogens
Genes in curated Protein Clusters
Genes with predictions submitted to COMBREX
P
Genes with solved structures in PDB
S
Genes with Pfam domains shared with human proteins
H
Genes with products purified by PSI
U
Genes cloned by PSI
C
close options

 

Gene rplA from Helicobacter pylori 26695: 50S ribosomal protein L1
Member of NCBI Protein Clusters PRK05424(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 899963
UniProtKB accession
RefSeq Protein accession NP_207992.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rplA
  • locus tag: HP1201
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L1
Source References Functional description
GSDB Under Review 50S ribosomal protein L1 (source organism: Helicobacter pylori; strain specific ID: NCBI_TaxID=210)
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • BP: GO:0006417 : regulation of translation : IEA
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006396 : RNA processing : IEA
  • BP: GO:0042742 : defense response to bacterium : IEA
  • MF: GO:0000049 : tRNA binding : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • CC: GO:0015934 : large ribosomal subunit : IEA
  • CC: GO:0005840 : ribosome : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
Domain Structure from CDD
  • Ribosomal_L1: Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
rplA (7)
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
rplL50S ribosomal protein L7/L12
 
 
rplJ50S ribosomal protein L10
 
 
rplK50S ribosomal protein L11
 
 
nusGtranscription antitermination protein NusG