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Gene rpsM from Helicobacter pylori 26695: 30S ribosomal protein S13
Member of NCBI Protein Clusters PRK05179(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 900282
UniProtKB accession
RefSeq Protein accession NP_208088.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsM
  • locus tag: HP1296
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S13
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins
green rpsM from Thermus thermophilus HB8
(%_identity=55.83; E_val=4e-35; BitScore=140.0)

other hits with E-value < 1e-05
Share the same Pfam domain composition with the following experimentally validated proteins
green rpsM from Escherichia coli str. K-12 substr. MG1655

to see the rest 3 genes click here
GO terms
  • CC: GO:0005622 : intracellular : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0000049 : tRNA binding : IEA
  • MF: GO:0003676 : nucleic acid binding : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • CC: GO:0005840 : ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
Domain Structure from CDD
  • Ribosomal_S13: Ribosomal protein S13/S18. 40S ribosomal protein S18; Provisional
  • RpsM: Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
infAtranslation initiation factor IF-1
 
 
rpsD30S ribosomal protein S4
 
 
HP129530S ribosomal protein S11
 
 
rpmJ50S ribosomal protein L36