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Gene rpmA from Escherichia coli str. K-12 substr. MG1655: 50S ribosomal subunit protein L27
Member of NCBI Protein Clusters PRK05435(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 945190
UniProtKB accession
RefSeq Protein accession NP_417652.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpmA
  • locus tag: b3185
  • aliases: ECK3174, JW3152, rpz
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 50S ribosomal protein L27
Source References Functional description
GSDB
[PMID: 1225626]
[PMID: 7556101]
[PMID: 10094780]
[PMID: 12809609]
[PMID: 16272117]
50S ribosomal protein L27 (source organism: Escherichia coli (strain K12).; strain specific ID: K12)
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006412 : translation : IEA
  • MF: GO:0000049 : tRNA binding : IEA
  • MF: GO:0019843 : rRNA binding : IEA
  • MF: GO:0003723 : RNA binding : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • CC: GO:0005840 : ribosome : IEA
Domain Structure from CDD
  • Ribosomal_L27: Ribosomal L27 protein. 50S ribosomal protein L27; Validated

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
NT01EI_0450 , rpmA (125) , Tola_2378 , VCD_001170
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 gene neighbourhoods
phylogenetic profile
rplU50S ribosomal subunit protein L21
 
 
yhbEconserved inner membrane protein
 
 
tsfprotein chain elongation factor EF-Ts 
 
lepAback-translocating Elongation Factor EF4, GTPase 
 
acpPacyl carrier protein (ACP) 
 
rluD23S rRNA pseudouridine synthase; specific to U1911 
 
rplI50S ribosomal subunit protein L9 
 
prfApeptide chain release factor RF-1 
 
rluApseudouridine synthase for 23S rRNA (position 746) 
 
rpmI50S ribosomal subunit protein L35 
 
frrribosome recycling factor 
 
truCtRNA U65 pseudouridine synthase 
 
rpsR30S ribosomal subunit protein S18 
 
rplQ50S ribosomal subunit protein L17 
 
rluC23S rRNA pseudouridine synthase; specific to U955, 
 
rpsP30S ribosomal subunit protein S16 
 
obgEGTPase involved in cell partioning and DNA repair 
 
pthpeptidyl-tRNA hydrolase 
 
tufBprotein chain elongation factor EF-Tu (duplicate o 
 
aspSaspartyl-tRNA synthetase 
 
rpsF30S ribosomal subunit protein S6 
 
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methylt 
 
yidCmembrane protein insertase 
 
arnAfused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'- 
 
tufAprotein chain elongation factor EF-Tu (duplicate o 
 
ftsHprotease, ATP-dependent zinc-metallo 
 
rplS50S ribosomal subunit protein L19 
 
fmt10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N 
 
rpmG50S ribosomal subunit protein L33 
 
ssbsingle-stranded DNA-binding protein 
 
rncRNase III 
 
rplL50S ribosomal subunit protein L7/L12 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 13129938
(not essential)
PMID: 17700540
(candidate essential)
PMID: 20029369
(candidate essential)