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Gene ycjO from Escherichia coli str. K-12 substr. MG1655: predicted sugar transporter subunit: membrane component of ABC superfamily
Member of NCBI Protein Clusters CLSK880117(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 945888
UniProtKB accession
RefSeq Protein accession NP_415827.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: ycjO
  • locus tag: b1311
  • aliases: ECK1306, JW1304
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc: G6649
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction putative binding-protein dependent transport protein
Source References Functional description
GSDB Under Review inner membrane ABC transporter permease protein ycjO (source organism: Escherichia coli K12; strain specific ID: NCBI_TaxID=83333)
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • MF: GO:0005215 : transporter activity : IEA
  • CC: GO:0016020 : membrane : IEA
  • BP: GO:0006810 : transport : IEA
  • CC: GO:0005886 : plasma membrane : IEA
  • CC: GO:0016021 : integral to membrane : IEA
Domain Structure from CDD
  • TM_PBP2: Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters .... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
EcE24377A_1521 , ECH74115_1956 , EcHS_A1426 , EcolC_2314 , ECP_1363 , ECs1890 , ECSE_1363 , EcSMS35_1811 , Ent638_2163 , ESA_01604 , SARI_01286 , ycjO (16)
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 gene neighbourhoods
phylogenetic profile
ycjPpredicted sugar transporter subunit: membrane comp
 
 
ugpBglycerol-3-phosphate transporter subunit 
 
ugpEglycerol-3-phosphate transporter subunit 
 
ycjNpredicted sugar transporter subunit: periplasmic-b