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Gene rpsJ from Escherichia coli str. K-12 substr. MG1655: 30S ribosomal subunit protein S10
Member of NCBI Protein Clusters PRK00596(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 947816
UniProtKB accession
RefSeq Protein accession NP_417780.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsJ
  • locus tag: b3321
  • aliases: ECK3308, JW3283, nusE
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S10
Source References Functional description
GSDB
[PMID: 7007073]
[PMID: 9298646]
[PMID: 10094780]
[PMID: 12809609]
[PMID: 16272117]
30S ribosomal protein S10 (source organism: Escherichia coli (strain K12).; strain specific ID: )
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • MF: GO:0000049 : tRNA binding : IDA
  • CC: GO:0015935 : small ribosomal subunit : IEA
  • BP: GO:0031564 : transcription antitermination : IMP
  • CC: GO:0005622 : intracellular : IEA
  • BP: GO:0006412 : translation : IDA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • CC: GO:0005840 : ribosome : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IDA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • BP: GO:0006412 : translation : IEA
  • CC: GO:0022627 : cytosolic small ribosomal subunit : IDA
  • CC: GO:0015935 : small ribosomal subunit : IDA
  • MF: GO:0000049 : tRNA binding : IEA
  • BP: GO:0031564 : transcription antitermination : IDA
  • MF: GO:0005515 : protein binding : IPI
  • MF: GO:0003723 : RNA binding : IEA
Domain Structure from CDD
  • Ribosomal_S10: Ribosomal protein S10p/S20e. 40S ribosomal protein S20; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
APP7_1844 , Asuc_0458 , CGSHiGG_07380 , CKO_04739 , Csal_0420 , Ent638_3752 , ESA_00001 , HSM_1951 , MADE_00444 , Mmwyl1_4277 , NT01EI_3595 , nusE , Patl_0468 , Ping_3525 , rplC , rpsJ (146) , Sama_0212 , SARI_04186 , Sde_0959 , Sden_0169 , Sfri_0147 , Shal_4135 , SPAB_04283 , Spea_0183 , Spro_4545 , Ssed_4318 , SSPA3086 , Swoo_4691 , Tcr_0294 , Tgr7_2325 , Tola_0098 , VCD_001766 , VS_2833 , YPA_3264 , YPDSF_0132 , YPK_0282 , YPN_3860 , YPTS_3891
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 gene neighbourhoods
phylogenetic profile
rplC50S ribosomal subunit protein L3
 
 
rpsQ30S ribosomal subunit protein S17 
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 13129938
(candidate essential)
PMID: 17700540
(candidate essential)
PMID: 20029369
(candidate essential)