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Gene rpsF from Helicobacter pylori 26695: 30S ribosomal protein S6

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Summary
Member of NCBI Protein Clusters PRK00453(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 898775
UniProtKB accession
RefSeq Protein accession NP_208038.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rpsF
  • locus tag: HP1246
Organism Helicobacter pylori 26695 (NCBI TaxID: 85962)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc:

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Actions You Can Take
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Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).

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Function Predictions
Source Predicted function(s)
NCBI Protein Cluster Prediction 30S ribosomal protein S6
Berkeley Phylogenomics Group GO:0005515 protein binding / (References: 19435885)
Berkeley Phylogenomics Group GO:0003735 structural constituent of ribosome / (References: 19435885)

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Supporting Functional Information
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green rpsF from Bacillus subtilis subsp. subtilis str. 168

to see the rest 3 genes click here
GO terms
  • MF: GO:0019843 : rRNA binding : IEA
  • CC: GO:0030529 : ribonucleoprotein complex : IEA
  • MF: GO:0003735 : structural constituent of ribosome : IEA
  • BP: GO:0006412 : translation : IEA
  • CC: GO:0005840 : ribosome : IEA
  • MF: GO:0003723 : RNA binding : IEA
Domain Structure from CDD
  • Ribosomal_S6: Ribosomal protein S6. 30S ribosomal protein S6; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database

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Functionally Linked Genes
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 OperonDB
gene neighbourhoods
phylogenetic profile
rpsR30S ribosomal protein S18
 
 
 
HP1245single-stranded DNA-binding protein
 
 
 
HP1248virulence associated protein homolog (vacB)
 
  
HP1247DNA polymerase III subunit delta
 
  
rpsP30S ribosomal protein S16  
 
HP0286cell division protein (ftsH)  
 
fmtmethionyl-tRNA formyltransferase  
 
rpmB50S ribosomal protein L28  
 
prfApeptide chain release factor 1  
 
HP1497peptidyl-tRNA hydrolase  
 
HP0355GTP-binding protein LepA  
 
aspSaspartyl-tRNA synthetase  
 
rplQ50S ribosomal protein L17  
 
rncribonuclease III  
 
rplS50S ribosomal protein L19  
 
HP1069cell division protein (ftsH)  
 
rplL50S ribosomal protein L7/L12  
 
rpmA50S ribosomal protein L27  
 
rpmH50S ribosomal protein L34  
 
HP1450putative inner membrane protein translocase compon  
 
rpmG50S ribosomal protein L33  
 
rpmJ50S ribosomal protein L36  
 
frrribosome recycling factor  
 

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Pathway Information

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Phenotype data
Phenotype Description Expression
Class		 Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 15547264
(candidate essential)