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Gene ycjN from Escherichia coli str. K-12 substr. MG1655: predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily

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Summary
Member of NCBI Protein Clusters CLSK880923(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 945696
UniProtKB accession
RefSeq Protein accession NP_415826.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: ycjN
  • locus tag: b1310
  • aliases: ECK1305, JW1303
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc: G6648

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Actions You Can Take
Initiate the grant application process for experimentally validating this gene (Important notice about COMBREX grants.)
Contribute a predicted function for this gene (free text, GO terms, or EC number) (info). Be sure to check the list of current predicted functions in the section immediately below beforehand.
Nominate this gene for the Gold Standard Gene Database (if you believe it has been experimentally validated) (info).
Post a comment about this gene to appear on this page (info).

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Function Predictions
Source Predicted function(s)
NCBI Protein Cluster Prediction putative sugar transporter subunit: periplasmic-binding component of ABC superfamily transporter

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Supporting Functional Information
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green lplA from Bacillus subtilis subsp. subtilis str. 168

to see the rest 27 genes click here
GO terms
  • BP: GO:0006810 : transport : IEA
  • MF: GO:0005215 : transporter activity : IEA
  • CC: GO:0042597 : periplasmic space : IEA
Domain Structure from CDD
  • UgpB: ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database

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Functionally Linked Genes
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 phylogenetic profile
malFmaltose transporter subunit
 
ugpEglycerol-3-phosphate transporter subunit
 
ugpAglycerol-3-phosphate transporter subunit
 
ycjPpredicted sugar transporter subunit: membrane comp
 
ycjOpredicted sugar transporter subunit: membrane comp