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Gene rimM from Escherichia coli str. K-12 substr. MG1655: 16S rRNA processing protein
Member of NCBI Protein Clusters PRK00122(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 947101
UniProtKB accession
RefSeq Protein accession NP_417099.4 (PROVISIONAL)
Gene Symbol(s)
  • symbol: rimM
  • locus tag: b2608
  • aliases: ECK2605, JW5413, yfjA
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc: EG11153
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction 16S rRNA-processing protein RimM
Source References Functional description
GSDB
[PMID: 9226267]
[PMID: 9422595]
[PMID: 11514519]
Ribosome maturation factor rimM (source organism: Escherichia coli (strain K12).; strain specific ID: MW100)
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • CC: GO:0005737 : cytoplasm : IEA
  • BP: GO:0006364 : rRNA processing : IEA
  • BP: GO:0042274 : ribosomal small subunit biogenesis : IEA
  • BP: GO:0030490 : maturation of SSU-rRNA : IMP
  • MF: GO:0043022 : ribosome binding : IEA
  • CC: GO:0005840 : ribosome : IEA
  • BP: GO:0042254 : ribosome biogenesis : IEA
Domain Structure from CDD
  • PRCH: N/A. Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but a.... (More)
  • rimM: 16S rRNA-processing protein RimM; Provisional
  • RimM: RimM N-terminal domain. The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown t.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
rimM (62) , yfjA
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 phylogenetic profile
rluE23S rRNA U2457 pseudouridine synthase
 
dadXalanine racemase 2, PLP-binding
 
nlpDnovel lipoprotein, function unknown
 
murBUDP-N-acetylenolpyruvoylglucosamine reductase, FAD
 
priAPrimosome factor n' (replication factor Y)
 
murCUDP-N-acetylmuramate:L-alanine ligase
 
macAmacrolide transporter subunit, membrane fusion pro
 
clpPproteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP
 
mdtAmultidrug efflux system, subunit A
 
yhiIpredicted membrane fusion protein (MFP) of efflux
 
coaDpantetheine-phosphate adenylyltransferase
 
gyrBDNA gyrase, subunit B
 
clpXATPase and specificity subunit of ClpX-ClpP ATP-de
 
xseBexonuclease VII small subunit
 
mplUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-mes
 
rluB23S rRNA pseudouridylate synthase
 
ygeRnovel lipoprotein, function unknown
 
mfdtranscription-repair coupling factor
 
yebApredicted peptidase
 
mrdAtranspeptidase involved in peptidoglycan synthesis
 
recNrecombination and repair protein
 
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase
 
mrdBcell wall shape-determining protein
 
cusBcopper/silver efflux system, membrane fusion prote
 
queAS-adenosylmethionine:tRNA ribosyltransferase-isome
 
typAGTP-binding protein
 
mrcBfused glycosyl transferase and transpeptidase
 
mdtEmultidrug resistance efflux transporter
 
ftsItranspeptidase involved in septal peptidoglycan sy
 
ybhGpredicted membrane fusion protein (MFP) component
 
rsuA16S rRNA U516 pseudouridine synthase
 
alralanine racemase 1, PLP-binding, biosynthetic
 
mtgAbiosynthetic peptidoglycan transglycosylase
 
acrAmultidrug efflux system
 
ftsWintegral membrane protein involved in stabilizing
 
murIglutamate racemase
 
recGATP-dependent DNA helicase
 
glmUfused N-acetyl glucosamine-1-phosphate uridyltrans
 
rluF23S rRNA U2604 pseudouridine synthase
 
Phenotype Description Expression
Class
Reference(s)
Candidate essential gene Identified as essential gene in one or more studies (see references) Knock out
PMID: 13129938
(candidate essential)
PMID: 17700540
(not essential)
PMID: 20029369
(not essential)