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Gene yggW from Escherichia coli str. K-12 substr. MG1655: predicted oxidoreductase, HemN family
Member of NCBI Protein Clusters PRK05660(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 947446
UniProtKB accession
RefSeq Protein accession NP_417430.1 (PROVISIONAL)
Gene Symbol(s)
  • symbol: yggW
  • locus tag: b2955
  • aliases: ECK2950, JW2922
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc: G7531
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Post a comment about this gene to appear on this page (info).
Source Predicted function(s)
NCBI Protein Cluster Prediction coproporphyrinogen III oxidase
Functional Status blueblue (function predicted, no experimental evidence)
Source of prediction NCBI Protein Clusters info
BLASTP hits to experimentally validated proteins This gene does not have a BLAST match to any experimentally validated gene with an E value below 1e-5
Share the same Pfam domain composition with the following experimentally validated proteins
green hemN from Escherichia coli str. K-12 substr. MG1655

to see the rest 2 gene click here
GO terms
  • BP: GO:0055114 : oxidation reduction : IEA
  • MF: GO:0003824 : catalytic activity : IEA
  • MF: GO:0046872 : metal ion binding : IEA
  • BP: GO:0006779 : porphyrin biosynthetic process : IEA
  • MF: GO:0051536 : iron-sulfur cluster binding : IEA
  • MF: GO:0016491 : oxidoreductase activity : IEA
  • MF: GO:0051539 : 4 iron, 4 sulfur cluster binding : IEA
  • MF: GO:0004109 : coproporphyrinogen oxidase activity : IEA
  • MF: GO:0005506 : iron ion binding : IEA
  • CC: GO:0005737 : cytoplasm : IEA
Domain Structure from CDD
  • HemN_C: HemN C-terminal region. Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This e.... (More)
  • PRK05660: coproporphyrinogen III oxidase; Provisional
  • Radical_SAM: Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine.... (More)

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see www.java.com
 gene neighbourhoods
phylogenetic profile
rdgBdITP/XTP pyrophosphatase
 
 
ftsItranspeptidase involved in septal peptidoglycan sy 
 
rluF23S rRNA U2604 pseudouridine synthase 
 
rluE23S rRNA U2457 pseudouridine synthase 
 
murBUDP-N-acetylenolpyruvoylglucosamine reductase, FAD 
 
priAPrimosome factor n' (replication factor Y) 
 
murCUDP-N-acetylmuramate:L-alanine ligase 
 
clpPproteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP 
 
mrdBcell wall shape-determining protein 
 
radADNA repair protein 
 
ftsWintegral membrane protein involved in stabilizing  
 
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase 
 
rsuA16S rRNA U516 pseudouridine synthase 
 
clpXATPase and specificity subunit of ClpX-ClpP ATP-de 
 
secGpreprotein translocase membrane subunit 
 
mplUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-mes 
 
rluB23S rRNA pseudouridylate synthase 
 
mfdtranscription-repair coupling factor 
 
mrdAtranspeptidase involved in peptidoglycan synthesis