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Gene yhgF from Escherichia coli str. K-12 substr. MG1655: predicted transcriptional accessory protein
Member of NCBI Protein Clusters CLSK862831(See COMBREX Page ) (See NCBI page)
NCBI Entrez GeneID 947911
UniProtKB accession
RefSeq Protein accession NP_417866.4 (PROVISIONAL)
Gene Symbol(s)
  • symbol: yhgF
  • locus tag: b3407
  • aliases: ECK3394, JW3370
Organism Escherichia coli str. K-12 substr. MG1655 (NCBI TaxID: 511145)
Other Cross References:
  • S
    Structure(s) available in PDB:
  • C
    Gene cloned by a participant in the Protein Structure Initiative (PSI): TargetDB. (To obtain a clone, please contact the PSI:Biology-Materials Repository.)
  • U
    Protein purified by a participant in the Protein Structure Initiative (PSI): TargetDB. (If you are interested in collaborating to obtain the protein, please contact the Northeast Structural Genomics consortium).
  • Protein described in EcoCyc: G7746
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Source Predicted function(s)
NCBI Protein Cluster Prediction putative transcriptional accessory protein
Source References Functional description
GSDB Under Review protein yhgF (source organism: Escherichia coli K12; strain specific ID: NCBI_TaxID=83333)
Functional Status greenGreen (experimental evidence, uncurated)
GO terms
  • BP: GO:0006139 : nucleobase, nucleoside, nucleotide and nucleic acid metabolic process : IEA
  • MF: GO:0016788 : hydrolase activity, acting on ester bonds : IEA
  • MF: GO:0005515 : protein binding : IPI
  • MF: GO:0003723 : RNA binding : IEA
Domain Structure from CDD
  • S1_Tex: S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordete.... (More)
  • UPF0081: Uncharacterized protein family (UPF0081). Holliday junction resolvase-like protein; Reviewed
  • Tex: Transcriptional accessory protein [Transcription]
  • Tex_N: Tex-like protein N-terminal domain. This presumed domain is found at the N-terminus of protein tex from Bordetella pertu.... (More)
  • ENDO3c: N/A. photosystem II complex extrinsic protein precursor U; Provisional

See domain structure on NCBI Conserved Domain Database
Domain structure from Pfam
See domain structure on Pfam Database
Based on the function of this gene, COMBREX predictions were made to the following related genes (mouse over gene symbol for details) [Download ]
CKO_04829 , ECH74115_4713 , EcolC_0306 , ECP_3493 , ECs4249 , ECSE_3672 , EcSMS35_3688 , Ent638_3820 , ESA_04332 , KP1_5108 , KPK_0339 , NT01EI_3647 , plu0210 , SARI_04111 , SbBS512_E3786 , SeAg_B3705 , SeD_A3873 , SeHA_C3811 , SeSA_A3702 , SG2321 , SNSL254_A3777 , SPAB_04360 , Spro_4627 , SSPA3144 , STY4292 , t4002 , tex (2) , teX , y3913 , yhgF (29) , YP_0135 , YPA_3335 , YpAngola_A3743 , YPDSF_0061 , YPK_0170 , YPN_3931 , YPO0134 , YpsIP31758_3982 , YPTB3766 , YPTS_3962
The table at right lists genes that may be "functionally linked to" (i.e., participate in a common biological process, or form a protein complex with) the subject gene of this page, as determined by two sequence-independent methods, including phylogenetic profiling and operon membership (determined by OperonDB). (Info.) These linkages may also be viewed graphically using the program VisANT, by clicking on the headers of the table. Note: VisANT requires Java. To install the latest version of Java, see
 domain fusion
tsfprotein chain elongation factor EF-Ts