Recently Published
- Blaxter, Mark, Antoine Danchin, Babis Savakis, Kaoru Fukami-Kobayashi, Ken Kurokawa, Sumio Sugano, Richard J Roberts, Steven L Salzberg, and Chung-I Wu. “Reminder to Deposit DNA Sequences.” Science (New York, N.Y.) 352, no. 6287 (May 13, 2016): 780. doi:10.1126/science.aaf7672.
- Chang, Yi-Chien, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts, and Martin Steffen. "COMBREX-DB: An Experiment Centered Database of Protein Function: Knowledge, Predictions and Knowledge Gaps.” Nucleic Acids Research 44, no. D1 (January 4, 2016): D330–35. doi:10.1093/nar/gkv1324.
- Fomenkov, Alexey, Tamas Vincze, Margarita Y Grabovich, Galina Dubinina, Maria Orlova, Elena Belousova, and Richard J Roberts. “Complete Genome Sequence of the Freshwater Colorless Sulfur Bacterium Beggiatoa Leptomitiformis Neotype Strain D-402T.” Genome Announcements 3, no. 6 (2015). doi:10.1128/genomeA.01436-15.
- Mariita, Richard M, Srijak Bhatnagar, Kurt Hanselmann, Mohammad J Hossain, Jonas Korlach, Matthew Boitano, Richard J Roberts, et al. “Complete Genome Sequence of Curtobacterium Sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.” Genome Announcements 3, no. 6 (2015). doi:10.1128/genomeA.01504-15.
- Mariita, Richard M, Srijak Bhatnagar, Kurt Hanselmann, Mohammad J Hossain, Jonas Korlach, Matthew Boitano, Richard J Roberts, et al. “Complete Genome Sequence of Streptomyces Sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.” Genome Announcements 3, no. 6 (2015). doi:10.1128/genomeA.01506-15.
- Fomenkov, Alexey, Tamas Vincze, Margarita Grabovich, Brian P Anton, Galina Dubinina, Maria Orlova, Elena Belousova, and Richard J Roberts. “Complete Genome Sequence of a Strain of Azospirillum Thiophilum Isolated from a Sulfide Spring.” Genome Announcements 4, no. 1 (2016). doi:10.1128/genomeA.01521-15.
- Yao, Kuan, Tim Muruvanda, Richard J Roberts, Justin Payne, Marc W Allard, and Maria Hoffmann. “Complete Genome and Methylome Sequences of Two Salmonella Enterica Spp.” Genome Announcements 4, no. 1 (2016). doi:10.1128/genomeA.01599-15.
- Agre, Peter, Carolyn Bertozzi, Mina Bissell, Kevin P Campbell, Richard D Cummings, Umesh R Desai, Mary Estes, et al. “Training the next Generation of Biomedical Investigators in Glycosciences.” The Journal of Clinical Investigation 126, no. 2 (February 2016): 405–8. doi:10.1172/JCI85905.
- Blow, Matthew J, Tyson A Clark, Chris G Daum, Adam M Deutschbauer, Alexey Fomenkov, Roxanne Fries, Jeff Froula, et al. “The Epigenomic Landscape of Prokaryotes.” PLoS Genetics 12, no. 2 (February 2016): e1005854. doi:10.1371/journal.pgen.1005854.
- Yao, Kuan, Tim Muruvanda, Richard J Roberts, Justin Payne, Marc W Allard, and Maria Hoffmann. “Complete Genome and Methylome Sequences of Salmonella Enterica Subsp. Enterica Serovar Panama (ATCC 7378) and Salmonella Enterica Subsp. Enterica Serovar Sloterdijk (ATCC 15791).” Genome Announcements 4, no. 2 (2016). doi:10.1128/genomeA.00133-16.
- Callahan, Scott J, Yvette A Luyten, Yogesh K Gupta, Geoffrey G Wilson, Richard J Roberts, Richard D Morgan, and Aneel K Aggarwal. “Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.” PLoS Biology 14, no. 4 (April 2016): e1002442. doi:10.1371/journal.pbio.1002442.
- Vanderweyde, Tara, Daniel J Apicco, Katherine Youmans-Kidder, Peter E A Ash, Casey Cook, Edroaldo Lummertz da Rocha, Karen Jansen-West, et al. “Interaction of Tau with the RNA-Binding Protein TIA1 Regulates Tau Pathophysiology and Toxicity.” Cell Reports 15, no. 7 (May 17, 2016): 1455–66. doi:10.1016/j.celrep.2016.04.045.
- Herrera, Victorial, Martin Steffen, Ann Moran, Glaiza Tan, Pasion Khristine, Keith Rivera, Darryl Pappin, and Nelson Ruiz-Opazo. “Confirmation of Translatability and Functionality Certifies the Dual endothelin1/VEGFsp Receptor (DEspR) Protein Victoria LM Herrera.” BMC Molecular Biology, (Accepted).
Publications
- Anton, Brian P, Yi-Chien Chang, Peter Brown, Han-Pil Choi, Lina L Faller, Jyotsna Guleria, Zhenjun Hu, et al. “The COMBREX Project: Design, Methodology, and Initial Results.” PLoS Biology 11, no. 8 (August 2013): e1001638. doi:10.1371/journal.pbio.1001638.
- Wood, Derrick E, Henry Lin, Ami Levy-Moonshine, Rajiswari Swaminathan, Yi-Chien Chang, Brian P Anton, Lais Osmani, Martin Steffen, Simon Kasif, and Steven L Salzberg. “Thousands of Missed Genes Found in Bacterial Genomes and Their Analysis with COMBREX.” Biology Direct 7, no. 1 (January 2012): 37. doi:10.1186/1745-6150-7-37.
- Liu, Bo, Lina L Faller, Niels Klitgord, Varun Mazumdar, Mohammad Ghodsi, Daniel D Sommer, Theodore R Gibbons, et al. “Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease.” PloS One 7, no. 6 (January 2012): e37919. doi:10.1371/journal.pone.0037919.
- Roberts, Richard J, Yi-Chien Chang, Zhenjun Hu, John N Rachlin, Brian P Anton, Revonda M Pokrzywa, Han-Pil Choi, et al. “COMBREX: A Project to Accelerate the Functional Annotation of Prokaryotic Genomes.” Nucleic Acids Research 39, no. Database issue (January 2011): D11–14. doi:10.1093/nar/gkq1168.